Benchmark

Interaction Type	Detail
Protein-Carbohydrate	497 DataSet by Artificial Neural Network based on Bagging 497 DataSet by Artificial Neural Network 497 DataSet by Support Vector Machine 15 Glycan-Antibody Independent Set by Support Vector Machine 108 Independent Test Set by Artificial Neural Network based on Bagging Anti-peptide Antibody by Protein-Carbohydrate Model S88 unbounded DataSet by Artificial Neural Network S88 unbounded DataSet by Support Vector Machine S88 unbounded DataSet by Artificial Neural Network based on Bagging S23 unbounded DataSet by Artificial Neural Network based on Bagging
Protein-Protein	S432 DataSet by ANN_Bagging S432 DataSet by SVM_Bagging S142 DataSet by ANN_Bagging S17a unbounded DataSet by ANN_Bagging S67 DataSet by ANN_Bagging S58 DataSet by ANN_Bagging
PPI-Test	S13a unbounded DataSet by ANN_Bagging S44 DataSet by ANN_Bagging Anti-protein Antibody variable domain Anti-protein Antibody VH domain Anti-protein Antibody VL domain Antigen (Epitopia) Anti-peptide Antibody Paratope
Epitope	SEPPA TestSet by ANN_Bagging SEPPATrain84 by ANN_Bagging SEPPATest116 by ANN_Bagging SeppaTest84PPI_JNN by ANN_Bagging SeppaTest116-7-11 by ANN_Bagging S119
Protein-Ligand	S48 bounded DataSet by Artificial Neural Network based on Bagging S48 unbounded DataSet by Artificial Neural Network based on Bagging S198 DataSet by Artificial Neural Network based on Bagging S210 DataSet by Artificial Neural Network based on Bagging S523 DataSet By Artificial Neural Network based on Bagging Model DataSet By Artificial Neural Network based on Bagging
Protein-Peptide	S452 DataSet By Artificial Neural Network based on Bagging 263 DataSet By Artificial Neural Network based on Bagging 140 DataSet By Artificial Neural Network based on Bagging Anti-peptide Antibody by PPep Model Anti-protein Antibody variable domain by PPep Model
Druggable PPI hotspot sites	Druggable PPI hotspot sites benchmark results(2P2I)
Protein-Polynucleic Acid DNA+RNA	Protein-(DNA+RNA)
Protein-DNA	[DBP123] [Holo83] [Apo83]
Protein-RNA	[T206] [B106] [UB54] [HMUB21] [B44] [SG1003]
FMN	[P81] [P30] [P15]
Heme	[Training#1] [Training#2] [Test#1] [Test#2] [Holo] [Apo]
FA	[P75] [P25] [Holo] [Apo]
Protein-Zinc(Zn)	Zinc Training and Testing Data Set Zinc Independent Test Data Set Zinc Unbound Data Set
Protein-Magnesium(Mg)	Magnesium Training and Testing Data Set Magnesium Independent Test Data Set Magnesium Unbound Data Set
Protein-Calcium(Ca)	Calcium Training and Testing Data Set Calcium Independent Test Data Set Calcium Unbound Data Set
Protein-Copper(Cu)	Copper Training and Testing Data Set Copper Independent Test Data Set Copper Unbound Data Set
Protein-Manganese(Mn)	Manganese Training and Testing Data Set Manganese Independent Test Data Set Manganese Unbound Data Set
Human germline models and functional Ab	Prediction result (Confidence level)
Protein-Water	Link

DataSet\Model	PPI	Glycan	PPep
Anti-protein Ab	Link	-	Link
Anti-glycan Ab	-	-	-
Anti-peptide Ab	Link	-	Link